Commit 208e8e09 authored by Femi Kadri's avatar Femi Kadri

modified stampede submission scripts.

parent e570b2e3
......@@ -53,6 +53,10 @@ sbatch schooner_initial_LBM.sh #replace "initial" with resume or finalize for re
lsf_chain1.tcsh for jobs on stampede.Some modification is being currently being made to combine both into a single chain script************
nohup /scratch/kasperone1/lbm/lbm2/lbm_1/lsf_chain.tcsh schooner 6 >& lsf_chain_output.txt & #cluster name is schooner in this example
OR better still use environment variables.In this case however,you need to run the nohup command in the directory containing the chain script
and all the other program files.In this case,run as:
nohup $PWD'/lsf_chain.tcsh' schooner 6 >& lsf_chain_output.txt & #cluster name is schooner OR
nohup $PWD'/lsf_chain.tcsh' stampede 6 >& lsf_chain_output.txt &
#Remember to replace "/scratch/kasperone1/lbm/lbm2/lbm_1/lbm.git" with your full path of directory containing your chain script "lsf_chain.tcsh".
#6 here is the number of jobs being sent to the cluster.Replace it with the number of jobs you wish to run.Depending on the type
......
......@@ -20,7 +20,8 @@
#module restore system
#module list
#module load intel # Load any necessary modules
module load mvapich2/2.1
#module load mvapich2/2.1 # uncomment this command for jobs run on stampede.will not work on stampede2.
module load impi #use for stampede2 jobs only.uncomment for jobs on stampede.
# Use ibrun only for MPI codes. Don't use mpirun or srun.
# Do not add "-n" or "-np" options here. SLURM infers the
# process count from the "-N" and "-n" directives above.
......
......@@ -19,7 +19,8 @@
#SBATCH --mail-type=end # email me when the job finishes
#module restore system
#module list # Load any necessary modules
module load mvapich2/2.1
#module load mvapich2/2.1 #uncomment for jobs on stampede only.Will not work on stampede2
module load impi #use for jobs on stampede2.comment if running job on stampede.
# Use ibrun only for MPI codes. Don't use mpirun or srun.
# Do not add "-n" or "-np" options here. SLURM infers the
# process count from the "-N" and "-n" directives above.
......
......@@ -19,7 +19,8 @@
#SBATCH --mail-type=end # email me when the job finishes
#module restore system
#module list # Load any necessary modules
module load mvapich2/2.1
#module load mvapich2/2.1 #uncomment this command when running jobs on stampede only.Will not work on stampede2
module load impi #use this for stampede2.comment when running jobs on stampede
# Use ibrun only for MPI codes. Don't use mpirun or srun.
# Do not add "-n" or "-np" options here. SLURM infers the
# process count from the "-N" and "-n" directives above.
......
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